corebio.resource.scop.ClaRecord

Package corebio :: Package resource :: Module scop :: Class ClaRecord

Type ClaRecord

object --+
         |
        ClaRecord

Handle the SCOP CLAssification file, which describes SCOP domains.

The file format is described in the scop
"release notes.":http://scop.berkeley.edu/release-notes-1.55.html 
The latest CLA file can be found
"elsewhere at SCOP.":http://scop.mrc-lmb.cam.ac.uk/scop/parse/

sid         --  SCOP identifier. e.g. d1danl2
residues    --  The domain definition as a Residues object
sccs        --  SCOP concise classification strings.  e.g. b.1.2.1
sunid       --  SCOP unique identifier for this domain
hierarchy   --  A sequence of tuples (nodetype, sunid) describing the
                location of this domain in the SCOP hierarchy.
                See the Scop module for a description of nodetypes.

Method Summary
	`__init__(self, record)`
	`__str__(self)`
	`records(cla_file)` Iterates over a DOM file, generating DomRecords... (Static method)
Inherited from object
	`__delattr__(...)` x.__delattr__('name') <==> del x.name...
	`__getattribute__(...)` x.__getattribute__('name') <==> x.name...
	`__hash__(x)` x.__hash__() <==> hash(x)...
	`__new__(T, S, ...)` T.__new__(S, ...) -> a new object with type S, a subtype of T...
	`__reduce__(...)` helper for pickle...
	`__reduce_ex__(...)` helper for pickle...
	`__repr__(x)` x.__repr__() <==> repr(x)...
	`__setattr__(...)` x.__setattr__('name', value) <==> x.name = value...

Static Method Details

records(cla_file)

Iterates over a DOM file, generating DomRecords

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