corebio.resource.scop.DomRecord

Package corebio :: Package resource :: Module scop :: Class DomRecord

Type DomRecord

object --+
         |
        DomRecord

Handle the SCOP DOMain file.

The DOM file has been officially deprecated. For more information see
the SCOP"release notes.":http://scop.berkeley.edu/release-notes-1.55.html 
The DOM files for older releases can be found 
"elsewhere at SCOP.":http://scop.mrc-lmb.cam.ac.uk/scop/parse/

DOM records consist of 4 tab deliminated fields;
sid, pdbid, residues, hierarchy
For example ::

d1sctg_ 1sct    g:      1.001.001.001.001.001
d1scth_ 1sct    h:      1.001.001.001.001.001
d1flp__ 1flp    -       1.001.001.001.001.002
d1moh__ 1moh    -       1.001.001.001.001.002

sid -- The SCOP ID of the entry, e.g. d1anu1
residues -- The domain definition as a Residues object
hierarchy -- A string specifying where this domain is in the hierarchy.

Method Summary
	`__init__(self, record)`
	`__str__(self)`
	`records(dom_file)` Iterates over a DOM file, generating DomRecords... (Static method)
Inherited from object
	`__delattr__(...)` x.__delattr__('name') <==> del x.name...
	`__getattribute__(...)` x.__getattribute__('name') <==> x.name...
	`__hash__(x)` x.__hash__() <==> hash(x)...
	`__new__(T, S, ...)` T.__new__(S, ...) -> a new object with type S, a subtype of T...
	`__reduce__(...)` helper for pickle...
	`__reduce_ex__(...)` helper for pickle...
	`__repr__(x)` x.__repr__() <==> repr(x)...
	`__setattr__(...)` x.__setattr__('name', value) <==> x.name = value...

Static Method Details

records(dom_file)

Iterates over a DOM file, generating DomRecords

Generated by Epydoc 2.1 on

http://epydoc.sf.net