| Home | Trees | Index | Help |
|
|---|
| Package corebio :: Package resource :: Module scop :: Class Residues |
|
object --+
|
Residues
A collection of residues from a PDB structure. This class provides code to work with SCOP domain definitions. These are concisely expressed as a one or more chain fragments. For example, "(1bba A:10-20,B:)" indicates residue 10 through 20 (inclusive) of chain A, and every residue of chain B in the pdb structure 1bba. The pdb id and brackets are optional. In addition "-" indicates every residue of a pbd structure with one unnamed chain. Start and end residue ids consist of the residue sequence number and an optional single letter insertion code. e.g. "12", "-1", "1a", "1000" pdbid -- An optional PDB id, e.g. "1bba" fragments -- A sequence of tuples (chainID, startResID, endResID)
| Method Summary | |
|---|---|
__init__(self,
str)
| |
__str__(self)
| |
| Inherited from object | |
x.__delattr__('name') <==> del x.name... | |
x.__getattribute__('name') <==> x.name... | |
x.__hash__() <==> hash(x)... | |
T.__new__(S, ...) -> a new object with type S, a subtype of T... | |
helper for pickle... | |
helper for pickle... | |
x.__repr__() <==> repr(x)... | |
x.__setattr__('name', value) <==> x.name = value... | |
| Home | Trees | Index | Help |
|
|---|
| Generated by Epydoc 2.1 on | http://epydoc.sf.net |