Package corebio :: Package resource :: Module scop :: Class Residues
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Type Residues

object --+
         |
        Residues


A collection of residues from a PDB structure.

This class provides code to work with SCOP domain definitions. These
are concisely expressed as a one or more chain fragments. For example,
"(1bba A:10-20,B:)" indicates residue 10 through 20 (inclusive) of
chain A, and every residue of chain B in the pdb structure 1bba. The pdb
id and brackets are optional. In addition "-" indicates every residue of
a pbd structure with one unnamed chain.

Start and end residue ids consist of the residue sequence number and an
optional single letter insertion code. e.g. "12", "-1", "1a", "1000"


pdbid -- An optional PDB id, e.g. "1bba"
fragments -- A sequence of tuples (chainID, startResID, endResID)

Method Summary
  __init__(self, str)
  __str__(self)
    Inherited from object
  __delattr__(...)
x.__delattr__('name') <==> del x.name...
  __getattribute__(...)
x.__getattribute__('name') <==> x.name...
  __hash__(x)
x.__hash__() <==> hash(x)...
  __new__(T, S, ...)
T.__new__(S, ...) -> a new object with type S, a subtype of T...
  __reduce__(...)
helper for pickle...
  __reduce_ex__(...)
helper for pickle...
  __repr__(x)
x.__repr__() <==> repr(x)...
  __setattr__(...)
x.__setattr__('name', value) <==> x.name = value...

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