corebio.resource.stride.Stride

Package corebio :: Package resource :: Module stride :: Class Stride

Type Stride

object --+
         |
        Stride

Method Summary
	`__init__(self, stride_file)` Read and parse a STRIDE output file.
	`get_res(self, chainid, resid)` Return the given resiude...
	`primary(self)` Return the protein primary sequence as a Seq object.
	`secondary(self)` Return the secondary structure of the protien as a Seq object...
	`total_area(self)` Return the solvent accessible area...
Inherited from object
	`__delattr__(...)` x.__delattr__('name') <==> del x.name...
	`__getattribute__(...)` x.__getattribute__('name') <==> x.name...
	`__hash__(x)` x.__hash__() <==> hash(x)...
	`__new__(T, S, ...)` T.__new__(S, ...) -> a new object with type S, a subtype of T...
	`__reduce__(...)` helper for pickle...
	`__reduce_ex__(...)` helper for pickle...
	`__repr__(x)` x.__repr__() <==> repr(x)...
	`__setattr__(...)` x.__setattr__('name', value) <==> x.name = value...
	`__str__(x)` x.__str__() <==> str(x)...

Method Details

init(self, stride_file)
(Constructor)

Read and parse a STRIDE output file.

args:
    - stride_file   : An open file handle
attributes :
    - pdbid     : The PDB id.
    - res       : A list of Res objects, one per PDB resiude

Overrides:: __builtin__.object.__init__

get_res(self, chainid, resid)

Return the given resiude

primary(self)

Return the protein primary sequence as a Seq object.

secondary(self)

Return the secondary structure of the protien as a Seq object

total_area(self)

Return the solvent accessible area

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Type Stride

__init__(self, stride_file) (Constructor)

get_res(self, chainid, resid)

primary(self)

secondary(self)

total_area(self)

init(self, stride_file)
(Constructor)