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CoreBio

Package corebio :: Package ssearch_io :: Class Hit
[frames | no frames]

Type Hit

object --+
         |
        Hit


A search hit between a query sequence and a subject sequence.
Each hit may have one or more Alignments

target       -- Information about the target sequence. 
raw_score    -- Typically the ignficance of the hit in bits, e.g. 92.0
significance -- Typically evalue. e.g '2e-022' 
alignments   -- A list of alignments between subject and target
Method Summary
  __init__(self)
  __repr__(self)
    Inherited from object
  __delattr__(...)
x.__delattr__('name') <==> del x.name...
  __getattribute__(...)
x.__getattribute__('name') <==> x.name...
  __hash__(x)
x.__hash__() <==> hash(x)...
  __new__(T, S, ...)
T.__new__(S, ...) -> a new object with type S, a subtype of T...
  __reduce__(...)
helper for pickle...
  __reduce_ex__(...)
helper for pickle...
  __setattr__(...)
x.__setattr__('name', value) <==> x.name = value...
  __str__(x)
x.__str__() <==> str(x)...

Class Variable Summary
list __slots__ = ['target', 'raw_score', 'bit_score', 'signif...
member_descriptor alignments = <member 'alignments' of 'Hit' objects>
member_descriptor bit_score = <member 'bit_score' of 'Hit' objects>
member_descriptor raw_score = <member 'raw_score' of 'Hit' objects>
member_descriptor significance = <member 'significance' of 'Hit' objects>
member_descriptor target = <member 'target' of 'Hit' objects>

Class Variable Details

__slots__

Type:
list
Value:
['target', 'raw_score', 'bit_score', 'significance', 'alignments']

alignments

Type:
member_descriptor
Value:
<member 'alignments' of 'Hit' objects>

bit_score

Type:
member_descriptor
Value:
<member 'bit_score' of 'Hit' objects>

raw_score

Type:
member_descriptor
Value:
<member 'raw_score' of 'Hit' objects>

significance

Type:
member_descriptor
Value:
<member 'significance' of 'Hit' objects>

target

Type:
member_descriptor
Value:
<member 'target' of 'Hit' objects>

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CoreBio

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