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data: Standard information used in computational biology.
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moremath: Various bits of useful math not in the standard python library.
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resource: Access to programs, complex file formats and databases used in
computational biology.
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astral: ASTRAL dataset IO.
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scop: SCOP: Structural Classification of Proteins.
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stride: STRIDE: Protein secondary structure assignment from atomic coordinates.
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seq: Alphabetic sequences and associated tools and data.
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seq_io: Sequence file reading and writing.
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array_io: Read and write a rectangular array of sequence data.
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clustal_io: Read and write the CLUSTAL sequence file format.
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fasta_io: Read and write sequence information in FASTA format.
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genbank_io: Read GenBank flat files.
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intelligenetics_io: Read and write sequence information in IntelliGenetics format.
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msf_io: Read sequence information in MSF format.
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nbrf_io: Sequence IO for NBRF/PIR format.
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nexus_io: Read the sequence data from a nexus file.
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null_io: Null sequence IO.
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phylip_io: Read Sequences in interleaved Phylip format (not sequential) and returns a
list of sequences.
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plain_io: Read and write raw, unformatted sequence data.
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stockholm_io: Read a multiple sequence alignment in STOCKHOLM format.
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table_io: Read and write sequence information in tab delimited format.
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ssearch_io: Parse the output of BLAST and similar sequence search analysis reports.
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transform: Transformations of Seqs (alphabetic sequences).
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utils: Extra utilities and core classes not in standard python.
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deoptparse: Custom extensions to OptionParse for parsing command line options.
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